Refactor inference engine and task management: Remove obsolete inference engine and ONNX engine files, update inference processing to utilize batch handling, and enhance task management structure in documentation. Adjust paths for task specifications to align with new directory organization.

.cursor/README.md

@@ -16,7 +16,7 @@ If you want to run a specific skill directly (without the orchestrator), use the
 /problem                — interactive problem gathering → _docs/00_problem/
 /research               — solution drafts → _docs/01_solution/
 /plan                   — architecture, components, tests → _docs/02_document/
-/decompose              — atomic task specs → _docs/02_tasks/
+/decompose              — atomic task specs → _docs/02_tasks/todo/
 /implement              — batched parallel implementation → _docs/03_implementation/
 /deploy                 — containerization, CI/CD, observability → _docs/04_deploy/
 ```
@@ -122,7 +122,7 @@ Bottom-up codebase documentation. Analyzes existing code from modules through co
 
 2. /plan                                         — architecture, data model, deployment, components, risks, tests, Jira epics → _docs/02_document/
 
-3. /decompose                                    — atomic task specs + dependency table → _docs/02_tasks/
+3. /decompose                                    — atomic task specs + dependency table → _docs/02_tasks/todo/
 
 4. /implement                                    — batched parallel agents, code review, commit per batch → _docs/03_implementation/
 ```
@@ -150,7 +150,7 @@ Or just use `/autopilot` to run steps 0-5 automatically.
 | **problem** | "problem", "define problem", "new project" | `_docs/00_problem/` |
 | **research** | "research", "investigate" | `_docs/01_solution/` |
 | **plan** | "plan", "decompose solution" | `_docs/02_document/` |
-| **decompose** | "decompose", "task decomposition" | `_docs/02_tasks/` |
+| **decompose** | "decompose", "task decomposition" | `_docs/02_tasks/todo/` |
 | **implement** | "implement", "start implementation" | `_docs/03_implementation/` |
 | **code-review** | "code review", "review code" | Verdict: PASS / FAIL / PASS_WITH_WARNINGS |
 | **refactor** | "refactor", "improve code" | `_docs/04_refactoring/` |
@@ -185,7 +185,11 @@ _docs/
 │   ├── deployment/                      — containerization, CI/CD, environments, observability, procedures
 │   ├── diagrams/
 │   └── FINAL_report.md
-├── 02_tasks/                            — [JIRA-ID]_[name].md + _dependencies_table.md
+├── 02_tasks/                            — task workflow folders + _dependencies_table.md
+│   ├── _dependencies_table.md           — cross-task dependency graph (root level)
+│   ├── backlog/                         — parked tasks (not scheduled for implementation)
+│   ├── todo/                            — tasks ready for implementation
+│   └── done/                            — completed tasks (moved here by /implement)
 ├── 03_implementation/                   — batch reports, FINAL report
 ├── 04_deploy/                           — containerization, CI/CD, environments, observability, procedures, scripts
 ├── 04_refactoring/                      — baseline, discovery, analysis, execution, hardening
@@ -208,4 +212,4 @@ _docs/
 /decompose @_docs/02_document/components/03_parser/description.md
 ```
 
-Appends tasks for that component to `_docs/02_tasks/` without running bootstrap or cross-verification.
+Appends tasks for that component to `_docs/02_tasks/todo/` without running bootstrap or cross-verification.